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, "Batched Evaluation of Linear Tabled Logic Programs", in Computer Science and Information Systems, vol. 10, pp.1775–1797, October 2013. Download: ComSIS_sl010-1212.pdf (221.28 KB)
, "Managing experiments on cognitive processes in writing with HandSpy", in Computer Science and Information Systems, vol. 10, pp.1747–1773, October 2013. Abstract
, "Using proximity to compute semantic relatedness in RDF graphs", in Computer Science and Information Systems, vol. 10, pp.1727–1746, October 2013. Abstract
, "Improving the performance of Transposable Elements detection tools", in Journal of Integrative Bioinformatics (Special Issue - PACBB'13 Selected Extended Papers), vol. 10, November 2013. Download:
, "The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions", in PLoS ONE, vol. 8, pp.e63747, May 2013. Download:
, "Combining usage and content in an online recommendation system for music in the Long Tail", in International Journal of Multimedia Information Retrieval, Springer-Verlag, vol. 2, pp.3–13, March 2013.
, "Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation", in Genome Biology and Evolution, vol. 5, pp.661–679, March 2013. Download: j2013_nfonseca_gbe.pdf (1.09 MB)
, "Information-based measure of disagreement for more than two observers: a useful tool to compare the degree of observer disagreement", in BMC Medical Research Methodology, vol. 13, March 2013. Download: j2013_lfa_bmc.pdf (177.28 KB)
, "Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species", in GigaScience, vol. 2, July 2013. Download:
, "BigYAP: Exo-compilation meets UDI", in Journal of Theory and Practice of Logic Programming (29th International Conference on Logic Programming (ICLP 2013) Special Issue), Cambridge University Press, vol. 13, pp.799–813, July 2013. Download:
, "BabeLO - An Extensible Converter of Programming Exercises Formats", in IEEE Transactions on Learning Technologies, vol. 6, pp.38–45, January 2013. Abstract
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, "Computational Study of the Covalent Bonding of Microcystins to Cysteine Residues - a Reaction Involved in the Inhibition of the Ppp Family of Protein Phosphatases", in FEBS Journal, vol. 280, pp.674–680, January 2013.
, "One-Way Functions Using Algorithmic and Classical Information Theories", in Theory of Computing Systems, Springer-Verlag, vol. 52, pp.162–178, January 2013.
, "Customized Crowds and Active Learning to Improve Classification", in Expert Systems with Applications, Elsevier, vol. 40, pp.7212–7219, December 2013. Download:
, "Entropy and compression: two measures of complexity", in Journal of Evaluation in Clinical Practice, John Wiley & Sons, vol. 19, pp.1101–1106, December 2013.
, "crimsonHex: a learning objects repository for programming exercises", in Journal of Software: Practice and Experience, John Wiley & Sons, vol. 43, pp.911–935, August 2013. Download:
, "Ensemble - an E-Learning Framework", in Journal of Universal Computer Science, vol. 19, pp.2127–2149, August 2013. Abstract
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, "Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S-pollen genes support the 'non-self recognition by multiple factors' model", in Journal of Experimental Botany, vol. 64, pp.2423–2434, April 2013. Download: j2013_nfonseca_ExperimentalBotany.pdf (1.05 MB)
, "The Community Structure of a Multidimensional Network of News Clips", in International Journal of Web Based Communities, Inderscience, vol. 9, pp.411–429, 2013. Download: